Changes between Version 32 and Version 33 of Publications


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Timestamp:
01/22/17 15:48:36 (8 months ago)
Author:
lriva
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  • Publications

    v32 v33  
    11= Publications = 
    22 
     3== 2017 == 
     41. Ronchini C, Brozzi A, '''Riva L''', Luzi L, Gruszka AM, '''Melloni GEM''', Scanziani E, Dharmalingam G, Mutarelli M, Belcastro V, Lavorgna S, Rossi V, Spinelli O, Biondi A, Rambaldi A, Lo-Coco F, di Bernardo D, Pelicci PG. [http://www.nature.com/leu/journal/vaop/ncurrent/full/leu2016386a.html PML-RARA-associated cooperating mutations belong to a transcriptional network that is deregulated in myeloid leukemias]. Leukemia. 2017 Jan 20. doi: 10.1038/leu.2016.386. 
     5 
    36== 2016 == 
    4 1. D'Alesio C, Punzi S, Cicalese A, Fornasari L, Furia L, '''Riva L''', Carugo A, Curigliano G, Criscitiello C, Pruneri G, Pelicci PG, Faretta M, Bossi D, Lanfrancone L. RNAi screens identify CHD4 as an essential gene in breast cancer growth. Oncotarget. 2016 Oct 13. doi: 10.18632/oncotarget.12646. 
     72. D'Alesio C, Punzi S, Cicalese A, Fornasari L, Furia L, '''Riva L''', Carugo A, Curigliano G, Criscitiello C, Pruneri G, Pelicci PG, Faretta M, Bossi D, Lanfrancone L. RNAi screens identify CHD4 as an essential gene in breast cancer growth. Oncotarget. 2016 Oct 13. doi: 10.18632/oncotarget.12646. 
    58 
    6 2. Carugo A*, Genovese G*, Seth S*, Nezi L, Rose JL, Bossi D, Cicalese A, Shah PK, Viale A, Pettazzoni PF, Akdemir KC, Bristow CA, Robinson FS, Tepper J, Sanchez N, Gupta S, Estecio MR, Giuliani V, Dellino GI, '''Riva L''', Yao W, Di Francesco ME, Green T, D'Alesio C, Corti D, Kang Y, Jones P, Wang H, Fleming JB, Maitra A, Pelicci PG, Chin L, DePinhoRA, Lanfrancone L, Heffernan TP, Draetta GF. [http://www.sciencedirect.com/science/article/pii/S2211124716306611 In Vivo Functional Platform Targeting Patient-Derived Xenografts Identifies WDR5-Myc Association as a Critical Determinant of Pancreatic Cancer.] Cell Rep. 2016 Jun 16. pii: S2211-1247(16)30661-1. doi: 10.1016/j.celrep.2016.05.063 
     93. Carugo A*, Genovese G*, Seth S*, Nezi L, Rose JL, Bossi D, Cicalese A, Shah PK, Viale A, Pettazzoni PF, Akdemir KC, Bristow CA, Robinson FS, Tepper J, Sanchez N, Gupta S, Estecio MR, Giuliani V, Dellino GI, '''Riva L''', Yao W, Di Francesco ME, Green T, D'Alesio C, Corti D, Kang Y, Jones P, Wang H, Fleming JB, Maitra A, Pelicci PG, Chin L, DePinhoRA, Lanfrancone L, Heffernan TP, Draetta GF. [http://www.sciencedirect.com/science/article/pii/S2211124716306611 In Vivo Functional Platform Targeting Patient-Derived Xenografts Identifies WDR5-Myc Association as a Critical Determinant of Pancreatic Cancer.] Cell Rep. 2016 Jun 16. pii: S2211-1247(16)30661-1. doi: 10.1016/j.celrep.2016.05.063 
    710 
    8 3. Bossi D*, Cicalese A*, Dellino GI, Luzi L, '''Riva L''', D'Alesio C, Diaferia GR, Carugo A, Cavallaro E, Piccioni R, Barberis M, Mazzarol G, Testori A, Punzi S, Pallavicini I, Tosti G, Giacó L, '''Melloni G''', Heffernan TP, Natoli G, Draetta GF, Minucci S, Pelicci PG, Lanfrancone L. [http://cancerdiscovery.aacrjournals.org/content/6/6/650.long In Vivo Genetic Screens of Patient-Derived Tumors Revealed Unexpected Frailty of the Transformed Phenotype. Cancer Discov.] 2016 Jun;6(6):650-63. doi: 10.1158/2159-8290.CD-15-1200. 
     114. Bossi D*, Cicalese A*, Dellino GI, Luzi L, '''Riva L''', D'Alesio C, Diaferia GR, Carugo A, Cavallaro E, Piccioni R, Barberis M, Mazzarol G, Testori A, Punzi S, Pallavicini I, Tosti G, Giacó L, '''Melloni GEM''', Heffernan TP, Natoli G, Draetta GF, Minucci S, Pelicci PG, Lanfrancone L. [http://cancerdiscovery.aacrjournals.org/content/6/6/650.long In Vivo Genetic Screens of Patient-Derived Tumors Revealed Unexpected Frailty of the Transformed Phenotype. Cancer Discov.] 2016 Jun;6(6):650-63. doi: 10.1158/2159-8290.CD-15-1200. 
    912 
    10 4. '''Melloni GE*''', de Pretis S*, '''Riva L''', Pelizzola M, Céol A, '''Costanza J''', Müller H, Zammataro L. [http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-0935-7 LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer]. BMC Bioinformatics. 2016 Feb 9;17(1):80. doi: 10.1186/s12859-016-0935-7. 
     135. '''Melloni GEM*''', de Pretis S*, '''Riva L''', Pelizzola M, Céol A, '''Costanza J''', Müller H, Zammataro L. [http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-0935-7 LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer]. BMC Bioinformatics. 2016 Feb 9;17(1):80. doi: 10.1186/s12859-016-0935-7. 
    1114 
    1215== 2015 == 
    13 5. Cremona MA, Sangalli LM, Vantini S, Dellino GI, Pelicci PG, Secchi P, '''Riva L''' [http://www.biomedcentral.com/1471-2105/16/349 Peak shape clustering reveals biological insights]. BMC Bioinformatics.2015, 16:349. DOI: 10.1186/s12859-015-0787-6         
     166. Cremona MA, Sangalli LM, Vantini S, Dellino GI, Pelicci PG, Secchi P, '''Riva L''' [http://www.biomedcentral.com/1471-2105/16/349 Peak shape clustering reveals biological insights]. BMC Bioinformatics.2015, 16:349. DOI: 10.1186/s12859-015-0787-6         
    1417 
    15 6. de Pretis S, Kress T, Morelli MJ, '''Melloni GE''', '''Riva L''', Amati B, Pelizzola M. [http://bioinformatics.oxfordjournals.org/content/31/17/2829.long INSPEcT: a Computational Tool to Infer mRNA Synthesis, Processing and Degradation Dynamics from RNA- and 4sU-seq Time Course Experiments].  Bioinformatics (2015) 31 (17): 2829-2835. DOI: 10.1093/bioinformatics/btv288  
     187. de Pretis S, Kress T, Morelli MJ, '''Melloni GEM''', '''Riva L''', Amati B, Pelizzola M. [http://bioinformatics.oxfordjournals.org/content/31/17/2829.long INSPEcT: a Computational Tool to Infer mRNA Synthesis, Processing and Degradation Dynamics from RNA- and 4sU-seq Time Course Experiments].  Bioinformatics (2015) 31 (17): 2829-2835. DOI: 10.1093/bioinformatics/btv288  
    1619 
    17 7. Belloni E, Veronesi G, Rotta L, Volorio S, Sardella D, Bernard L, Pece S, Di Fiore PP,  Fumagalli C, Barberis M, Spaggiari L, Pelicci PG, '''Riva L'''. [http://www.sciencedirect.com/science/article/pii/S2210776215000253 Whole-exome sequencing identifies driver mutations in asymptomatic computed tomography-detected lung cancers with normal karyotype]. Cancer Genet. 2015 Feb 20. DOI:10.1016/j.cancergen.2015.02.004 
     208. Belloni E, Veronesi G, Rotta L, Volorio S, Sardella D, Bernard L, Pece S, Di Fiore PP,  Fumagalli C, Barberis M, Spaggiari L, Pelicci PG, '''Riva L'''. [http://www.sciencedirect.com/science/article/pii/S2210776215000253 Whole-exome sequencing identifies driver mutations in asymptomatic computed tomography-detected lung cancers with normal karyotype]. Cancer Genet. 2015 Feb 20. DOI:10.1016/j.cancergen.2015.02.004 
    1821 
    19 8. '''Bodini M''', Ronchini C, Giacò L, Russo A, '''Melloni GEM''', Luzi L, Sardella D, Volorio S, Hasan SK, Ottone T, Lavorgna S, Lo-Coco F, Candoni A, Fanin R, Toffoletti E, Iacobucci I, Martinelli G, Cignetti A, Tarella C, Bernard L, Pelicci PG, and  '''Riva L'''. [http://dx.doi.org/10.1182/blood-2014-05-576157 The hidden genomic landscape of acute myeloid leukemia: subclonal structure revealed by undetected mutations]. Blood. 2015 Jan 22;125(4):600-5. DOI 10.1182/blood-2014-05-576157 
     229. '''Bodini M''', Ronchini C, Giacò L, Russo A, '''Melloni GEM''', Luzi L, Sardella D, Volorio S, Hasan SK, Ottone T, Lavorgna S, Lo-Coco F, Candoni A, Fanin R, Toffoletti E, Iacobucci I, Martinelli G, Cignetti A, Tarella C, Bernard L, Pelicci PG, and  '''Riva L'''. [http://dx.doi.org/10.1182/blood-2014-05-576157 The hidden genomic landscape of acute myeloid leukemia: subclonal structure revealed by undetected mutations]. Blood. 2015 Jan 22;125(4):600-5. DOI 10.1182/blood-2014-05-576157 
    2023 
    2124== 2014 == 
    22 9. Mazzarella L, '''Riva L''', Luzi L, Ronchini C, Pelicci PG. [http://www.sciencedirect.com/science/article/pii/S0037196314000584 The Genomic and Epigenomic Landscapes of AML]. Semin Hematol. 2014 Oct; 51(4):259-72. DOI: 10.1053/j.seminhematol.2014.08.007. 
     2510. Mazzarella L, '''Riva L''', Luzi L, Ronchini C, Pelicci PG. [http://www.sciencedirect.com/science/article/pii/S0037196314000584 The Genomic and Epigenomic Landscapes of AML]. Semin Hematol. 2014 Oct; 51(4):259-72. DOI: 10.1053/j.seminhematol.2014.08.007. 
    2326 
    24 10. '''Melloni GEM''', Ogier AGE, de Pretis S, Mazzarella L, Pelizzola M, Pelicci PG, '''Riva L'''. [http://genomemedicine.com/content/6/6/44 DOTS-Finder: a comprehensive tool for assessing driver genes in cancer genomes]. Genome Medicine 2014, 6:44, DOI: 10.1186/gm563  
     2711. '''Melloni GEM''', Ogier AGE, de Pretis S, Mazzarella L, Pelizzola M, Pelicci PG, '''Riva L'''. [http://genomemedicine.com/content/6/6/44 DOTS-Finder: a comprehensive tool for assessing driver genes in cancer genomes]. Genome Medicine 2014, 6:44, DOI: 10.1186/gm563  
    2528 
    2629== 2013 == 
    27 11. '''Riva L*''', Ronchini C*, '''Bodini M''', Lo-Coco F, Lavorgna S, Ottone T, Martinelli G, Iacobucci I, Tarella C, Cignetti A, Volorio S, Bernard L, Russo A, '''Melloni GEM''', Luzi L, Alcalay M, Dellino GI and Pelicci PG. [http://www.ncbi.nlm.nih.gov/pubmed/24036946 Acute promyelocytic leukemias share cooperative mutations with other myeloid-leukemia subgroups]. Blood Cancer Journal (2013) 3, e147; DOI:10.1038/bcj.2013.46 
     3012. '''Riva L*''', Ronchini C*, '''Bodini M''', Lo-Coco F, Lavorgna S, Ottone T, Martinelli G, Iacobucci I, Tarella C, Cignetti A, Volorio S, Bernard L, Russo A, '''Melloni GEM''', Luzi L, Alcalay M, Dellino GI and Pelicci PG. [http://www.ncbi.nlm.nih.gov/pubmed/24036946 Acute promyelocytic leukemias share cooperative mutations with other myeloid-leukemia subgroups]. Blood Cancer Journal (2013) 3, e147; DOI:10.1038/bcj.2013.46 
    2831 
    2932== 2012 == 
    30 12. '''Riva L*''', Koeva M*, Yildirim F, Dinesh D, Mazor T, Pirhaji L, Duennwald ML, Fraenkel E. [http://www.ncbi.nlm.nih.gov/pubmed/23293686 Polyglutamine Expanded Huntingtin Dramatically Alters the Genome-Wide Binding of HSF-1].  Journal of Huntington’s Disease, Volume 1/Issue 1 (2012), DOI 10.3233/JHD-2012-120020. 
     3313. '''Riva L*''', Koeva M*, Yildirim F, Dinesh D, Mazor T, Pirhaji L, Duennwald ML, Fraenkel E. [http://www.ncbi.nlm.nih.gov/pubmed/23293686 Polyglutamine Expanded Huntingtin Dramatically Alters the Genome-Wide Binding of HSF-1].  Journal of Huntington’s Disease, Volume 1/Issue 1 (2012), DOI 10.3233/JHD-2012-120020. 
    3134 
    32 13. '''Riva L*''', Luzi L*, Pelicci PG. [http://www.ncbi.nlm.nih.gov/pubmed/22666660 Genomics of acute myeloid leukemia: the next generation]. Frontiers in Molecular and Cellular Oncology, Front. Oncol. 2012;2:40. doi: 10.3389/fonc.2012.00040  
     3514. '''Riva L*''', Luzi L*, Pelicci PG. [http://www.ncbi.nlm.nih.gov/pubmed/22666660 Genomics of acute myeloid leukemia: the next generation]. Frontiers in Molecular and Cellular Oncology, Front. Oncol. 2012;2:40. doi: 10.3389/fonc.2012.00040  
    3336 
    3437== 2009 == 
    35 14. Yu M*, '''Riva L*''', Xie H, Schindler Y, Moran TB, Cheng Y, Yu D, Hardison R, Weiss MJ, Orkin SH, Bernstein BE, Fraenkel E, Cantor AB.  [http://www.ncbi.nlm.nih.gov/pubmed/19941827 Insights into GATA-1-Mediated Gene Activation versus Repression via Genome-wide Chromatin Occupancy Analysis]. Mol Cell. 2009 Nov;36(4):682-695. 
     3815. Yu M*, '''Riva L*''', Xie H, Schindler Y, Moran TB, Cheng Y, Yu D, Hardison R, Weiss MJ, Orkin SH, Bernstein BE, Fraenkel E, Cantor AB.  [http://www.ncbi.nlm.nih.gov/pubmed/19941827 Insights into GATA-1-Mediated Gene Activation versus Repression via Genome-wide Chromatin Occupancy Analysis]. Mol Cell. 2009 Nov;36(4):682-695. 
    3639 
    37 15. Yeger-Lotem E*, '''Riva L*''', Su LJ, Gitler AD, Cashikar AG, King OD, Auluck PK, Geddie ML, Valastyan JS, Karger DR, Lindquist S, Fraenkel E. [http://www.ncbi.nlm.nih.gov/pubmed/19234470 Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity]. Nature Genetics. 2009 Mar;41(3):316-23. 
     4016. Yeger-Lotem E*, '''Riva L*''', Su LJ, Gitler AD, Cashikar AG, King OD, Auluck PK, Geddie ML, Valastyan JS, Karger DR, Lindquist S, Fraenkel E. [http://www.ncbi.nlm.nih.gov/pubmed/19234470 Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity]. Nature Genetics. 2009 Mar;41(3):316-23. 
    3841 
    3942